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<?php
/*
* Copyright 2014 Google Inc.
*
* Licensed under the Apache License, Version 2.0 (the "License"); you may not
* use this file except in compliance with the License. You may obtain a copy of
* the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS, WITHOUT
* WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the
* License for the specific language governing permissions and limitations under
* the License.
*/
class Google_Service_Genomics_Read extends Google_Collection
{
protected $collection_key = 'alignedQuality';
public $alignedQuality;
public $alignedSequence;
protected $alignmentType = 'Google_Service_Genomics_LinearAlignment';
protected $alignmentDataType = '';
public $duplicateFragment;
public $failedVendorQualityChecks;
public $fragmentLength;
public $fragmentName;
public $id;
public $info;
protected $nextMatePositionType = 'Google_Service_Genomics_Position';
protected $nextMatePositionDataType = '';
public $numberReads;
public $properPlacement;
public $readGroupId;
public $readGroupSetId;
public $readNumber;
public $secondaryAlignment;
public $supplementaryAlignment;
public function setAlignedQuality($alignedQuality)
{
$this->alignedQuality = $alignedQuality;
}
public function getAlignedQuality()
{
return $this->alignedQuality;
}
public function setAlignedSequence($alignedSequence)
{
$this->alignedSequence = $alignedSequence;
}
public function getAlignedSequence()
{
return $this->alignedSequence;
}
/**
* @param Google_Service_Genomics_LinearAlignment
*/
public function setAlignment(Google_Service_Genomics_LinearAlignment $alignment)
{
$this->alignment = $alignment;
}
/**
* @return Google_Service_Genomics_LinearAlignment
*/
public function getAlignment()
{
return $this->alignment;
}
public function setDuplicateFragment($duplicateFragment)
{
$this->duplicateFragment = $duplicateFragment;
}
public function getDuplicateFragment()
{
return $this->duplicateFragment;
}
public function setFailedVendorQualityChecks($failedVendorQualityChecks)
{
$this->failedVendorQualityChecks = $failedVendorQualityChecks;
}
public function getFailedVendorQualityChecks()
{
return $this->failedVendorQualityChecks;
}
public function setFragmentLength($fragmentLength)
{
$this->fragmentLength = $fragmentLength;
}
public function getFragmentLength()
{
return $this->fragmentLength;
}
public function setFragmentName($fragmentName)
{
$this->fragmentName = $fragmentName;
}
public function getFragmentName()
{
return $this->fragmentName;
}
public function setId($id)
{
$this->id = $id;
}
public function getId()
{
return $this->id;
}
public function setInfo($info)
{
$this->info = $info;
}
public function getInfo()
{
return $this->info;
}
/**
* @param Google_Service_Genomics_Position
*/
public function setNextMatePosition(Google_Service_Genomics_Position $nextMatePosition)
{
$this->nextMatePosition = $nextMatePosition;
}
/**
* @return Google_Service_Genomics_Position
*/
public function getNextMatePosition()
{
return $this->nextMatePosition;
}
public function setNumberReads($numberReads)
{
$this->numberReads = $numberReads;
}
public function getNumberReads()
{
return $this->numberReads;
}
public function setProperPlacement($properPlacement)
{
$this->properPlacement = $properPlacement;
}
public function getProperPlacement()
{
return $this->properPlacement;
}
public function setReadGroupId($readGroupId)
{
$this->readGroupId = $readGroupId;
}
public function getReadGroupId()
{
return $this->readGroupId;
}
public function setReadGroupSetId($readGroupSetId)
{
$this->readGroupSetId = $readGroupSetId;
}
public function getReadGroupSetId()
{
return $this->readGroupSetId;
}
public function setReadNumber($readNumber)
{
$this->readNumber = $readNumber;
}
public function getReadNumber()
{
return $this->readNumber;
}
public function setSecondaryAlignment($secondaryAlignment)
{
$this->secondaryAlignment = $secondaryAlignment;
}
public function getSecondaryAlignment()
{
return $this->secondaryAlignment;
}
public function setSupplementaryAlignment($supplementaryAlignment)
{
$this->supplementaryAlignment = $supplementaryAlignment;
}
public function getSupplementaryAlignment()
{
return $this->supplementaryAlignment;
}
}