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<?php /* * Copyright 2014 Google Inc. * * Licensed under the Apache License, Version 2.0 (the "License"); you may not * use this file except in compliance with the License. You may obtain a copy of * the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, WITHOUT * WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the * License for the specific language governing permissions and limitations under * the License. */ class Google_Service_Genomics_Read extends Google_Collection { protected $collection_key = 'alignedQuality'; public $alignedQuality; public $alignedSequence; protected $alignmentType = 'Google_Service_Genomics_LinearAlignment'; protected $alignmentDataType = ''; public $duplicateFragment; public $failedVendorQualityChecks; public $fragmentLength; public $fragmentName; public $id; public $info; protected $nextMatePositionType = 'Google_Service_Genomics_Position'; protected $nextMatePositionDataType = ''; public $numberReads; public $properPlacement; public $readGroupId; public $readGroupSetId; public $readNumber; public $secondaryAlignment; public $supplementaryAlignment; public function setAlignedQuality($alignedQuality) { $this->alignedQuality = $alignedQuality; } public function getAlignedQuality() { return $this->alignedQuality; } public function setAlignedSequence($alignedSequence) { $this->alignedSequence = $alignedSequence; } public function getAlignedSequence() { return $this->alignedSequence; } /** * @param Google_Service_Genomics_LinearAlignment */ public function setAlignment(Google_Service_Genomics_LinearAlignment $alignment) { $this->alignment = $alignment; } /** * @return Google_Service_Genomics_LinearAlignment */ public function getAlignment() { return $this->alignment; } public function setDuplicateFragment($duplicateFragment) { $this->duplicateFragment = $duplicateFragment; } public function getDuplicateFragment() { return $this->duplicateFragment; } public function setFailedVendorQualityChecks($failedVendorQualityChecks) { $this->failedVendorQualityChecks = $failedVendorQualityChecks; } public function getFailedVendorQualityChecks() { return $this->failedVendorQualityChecks; } public function setFragmentLength($fragmentLength) { $this->fragmentLength = $fragmentLength; } public function getFragmentLength() { return $this->fragmentLength; } public function setFragmentName($fragmentName) { $this->fragmentName = $fragmentName; } public function getFragmentName() { return $this->fragmentName; } public function setId($id) { $this->id = $id; } public function getId() { return $this->id; } public function setInfo($info) { $this->info = $info; } public function getInfo() { return $this->info; } /** * @param Google_Service_Genomics_Position */ public function setNextMatePosition(Google_Service_Genomics_Position $nextMatePosition) { $this->nextMatePosition = $nextMatePosition; } /** * @return Google_Service_Genomics_Position */ public function getNextMatePosition() { return $this->nextMatePosition; } public function setNumberReads($numberReads) { $this->numberReads = $numberReads; } public function getNumberReads() { return $this->numberReads; } public function setProperPlacement($properPlacement) { $this->properPlacement = $properPlacement; } public function getProperPlacement() { return $this->properPlacement; } public function setReadGroupId($readGroupId) { $this->readGroupId = $readGroupId; } public function getReadGroupId() { return $this->readGroupId; } public function setReadGroupSetId($readGroupSetId) { $this->readGroupSetId = $readGroupSetId; } public function getReadGroupSetId() { return $this->readGroupSetId; } public function setReadNumber($readNumber) { $this->readNumber = $readNumber; } public function getReadNumber() { return $this->readNumber; } public function setSecondaryAlignment($secondaryAlignment) { $this->secondaryAlignment = $secondaryAlignment; } public function getSecondaryAlignment() { return $this->secondaryAlignment; } public function setSupplementaryAlignment($supplementaryAlignment) { $this->supplementaryAlignment = $supplementaryAlignment; } public function getSupplementaryAlignment() { return $this->supplementaryAlignment; } }